Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA, FEMS Microbiology Ecology, vol.24, issue.1, pp.27-40, 1997. ,
DOI : 10.1111/j.1574-6941.1997.tb00420.x
Diversity of freeliving and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA, Appl. Environ. Microbiol, vol.65, pp.514-522, 1999. ,
Annual cycles of sea ice and phytoplankton in Cape Bathurst polynya, southeastern Beaufort Sea, Canadian Arctic, Geophysical Research Letters, vol.45, issue.8, pp.10-1029, 2004. ,
DOI : 10.14430/arctic1413
Secular trends in Arctic Ocean net primary production, Journal of Geophysical Research, vol.19, issue.9, p.10, 1029. ,
DOI : 10.1175/JCLI3767.1
Microbial structuring of marine ecosystems, Nature Reviews Microbiology, vol.16, issue.10, pp.782-791, 2007. ,
DOI : 10.2216/i0031-8884-16-3-253.1
Bacteriaorganic matter coupling and its significance for oceanic carbon cycling Microb, Ecol, vol.28, pp.167-17910, 1994. ,
DOI : 10.1007/bf00166806
Bottom-Up versus Top-Down Control of Hypo- and Epilimnion Free-Living Bacterial Community Structures in Two Neighboring Freshwater Lakes, Applied and Environmental Microbiology, vol.77, issue.11, pp.3591-3599, 2011. ,
DOI : 10.1128/AEM.02739-10
Nitrogen fixation and identification of potential diazotrophs in the Canadian Arctic, Global Biogeochemical Cycles, vol.35, issue.5, p.302210, 1029. ,
DOI : 10.1046/j.1462-2920.2003.00451.x
Summer community structure of aerobic anoxygenic phototrophic bacteria in the western Arctic Ocean, FEMS Microbiology Ecology, vol.85, issue.3, 2013. ,
DOI : 10.1111/1574-6941.12130
URL : https://hal.archives-ouvertes.fr/hal-01140647
Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient, The ISME Journal, vol.58, issue.1, pp.10-220, 2012. ,
DOI : 10.4319/lo.2004.49.5.1620
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526181
PyNAST: a flexible tool for aligning sequences to a template alignment, Bioinformatics, vol.26, issue.2, pp.266-26710, 2010. ,
DOI : 10.1093/bioinformatics/btp636
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2804299
Arctic Climate Impact Assessment (ACIA), in: Encyclopedia of Earth, National Council for Science and the Environment, 2010. ,
Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA, MicrobiologyOpen, vol.5, issue.4, pp.10-1111, 2013. ,
DOI : 10.1371/journal.pcbi.1000352
Dominance of particle-attached bacteria in the Columbia River estuary, USA, Aquatic Microbial Ecology, vol.14, pp.7-18, 1998. ,
DOI : 10.3354/ame014007
Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean, Appl. Environ. Microbiol, vol.65, pp.3192-3204, 1999. ,
The biogeochemistry of the river and shelf ecosystem of the Arctic Ocean: a review, Marine Chemistry, vol.83, issue.3-4, pp.103-12010, 2003. ,
DOI : 10.1016/S0304-4203(03)00105-1
Optical characterisation of suspended particles in the Mackenzie River plume (Canadian Arctic Ocean) and implications for ocean colour remote sensing, Biogeosciences, vol.9, issue.8, pp.3213-322910, 2012. ,
DOI : 10.5194/bg-9-3213-2012
Search and clustering orders of magnitude faster than BLAST, Bioinformatics, vol.26, issue.19, pp.2460-2461, 2010. ,
DOI : 10.1093/bioinformatics/btq461
Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment, Environmental Microbiology Reports, vol.63, issue.4, pp.449-458, 2011. ,
DOI : 10.1016/j.tim.2006.06.008
The annual cycle of particulate organic carbon export in Franklin Bay (Canadian Arctic): Environmental control and food web implications, J. Geophys. Res.-Oceans, vol.113, pp.350510-1029, 2008. ,
Ecosystem function and particle flux dynamics across the Mackenzie Shelf Arctic Ocean): an integrative analysis of spatial variability and biophysical forcings, Biogeosciences Discuss, vol.95194, pp.10883-1096010, 2012. ,
Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone, FEMS Microbiology Ecology, vol.78, issue.3, pp.586-603, 2012. ,
DOI : 10.1111/j.1574-6941.2011.01189.x
Microbial community diversity and heterotrophic production in a coastal Arctic ecosystem: A stamukhi lake and its source waters, Limnology and Oceanography, vol.53, issue.2, pp.813-823, 2008. ,
DOI : 10.4319/lo.2008.53.2.0813
Prokaryotic community structure and heterotrophic production in a river-influenced coastal arctic ecosystem, Aquat. Microb. Ecol, vol.42, pp.27-4010, 2006. ,
Importance of particle-associated bacterial heterotrophy in a coastal Arctic ecosystem, Journal of Marine Systems, vol.75, issue.1-2, pp.185-197, 2009. ,
DOI : 10.1016/j.jmarsys.2008.09.002
Pronounced summer to winter differences and higher wintertime richness in coastal Antarctic marine bacterioplankton, Environmental Microbiology, vol.45, issue.3, pp.617-629, 2012. ,
DOI : 10.1016/S0967-0637(98)00015-6
Spatial and temporal scales of variation in bacterioplankton community structure in the NW Mediterranean Sea, Aquatic Microbial Ecology, vol.40, pp.229-24010, 2005. ,
DOI : 10.3354/ame040229
URL : https://hal.archives-ouvertes.fr/hal-00091839
Diel and Seasonal Variations in Abundance, Activity, and Community Structure of Particle-Attached and Free-Living Bacteria in NW Mediterranean Sea, Microbial Ecology, vol.10, issue.41, pp.217-231, 2007. ,
DOI : 10.1139/o59-099
Role of environmental factors for the vertical distribution (0?1000 m) of marine bacterial communities in the NW Mediterranean Sea, Biogeosciences, vol.55194, pp.1751-176410, 1751. ,
URL : https://hal.archives-ouvertes.fr/hal-00330300
Diversity of total and active free-living vs. particle-attached bacteria in the euphotic zone of the NW Mediterranean Sea, FEMS Microbiology Letters, vol.299, issue.1, pp.9-21, 2009. ,
DOI : 10.1111/j.1574-6968.2009.01694.x
Pole-to-pole biogeography of surface and deep marine bacterial communities, Proc. Natl ,
DOI : 10.1128/AEM.01541-09
The seasonal structure of microbial communities in the Western English Channel, Environmental Microbiology, vol.95, issue.12, pp.3132-3139, 2009. ,
DOI : 10.1111/j.1462-2920.2009.02017.x
Use of Stable-Isotope Probing, Full-Cycle rRNA Analysis, and Fluorescence In Situ Hybridization-Microautoradiography To Study a Methanol-Fed Denitrifying Microbial Community, Applied and Environmental Microbiology, vol.70, issue.1, pp.588-596, 2004. ,
DOI : 10.1128/AEM.70.1.588-596.2004
Source and transport of terrigenous organic matter in the upper Yukon River: Evidence from isotope (delta C-13, Delta C-14, and delta N-15) composition of dissolved, colloidal, and particulate phases, Glob. Biogeochem. Cy, vol.20, pp.201110-1029, 2006. ,
Illustrating the importance of particulate organic matter to pelagic microbial abundance and community structure??an Arctic case study, Aquatic Microbial Ecology, vol.40, pp.217-22710, 2005. ,
DOI : 10.3354/ame040217
Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California, Aquatic Microbial Ecology, vol.21, pp.103-11410, 2000. ,
DOI : 10.3354/ame021103
along environmental gradients in the brackish northern Baltic Sea, Environmental Microbiology, vol.21, issue.8, pp.2042-2054, 2009. ,
DOI : 10.1002/j.1538-7305.1948.tb01338.x
Ironing out the wrinkles in the rare biosphere through improved OTU clustering, Environmental Microbiology, vol.30, issue.7, pp.1889-1898, 2010. ,
DOI : 10.1101/gr.8.3.175
Microbial Populations Responsive to Denitrification-Inducing Conditions in Rice Paddy Soil, as Revealed by Comparative 16S rRNA Gene Analysis, Applied and Environmental Microbiology, vol.75, issue.22, pp.7070-70781001481, 1128. ,
DOI : 10.1128/AEM.01481-09
Comparison of free-living, suspended particle, and aggregate-associated Bacterial and Archaeal communities in the Laptev Sea, Aquatic Microbial Ecology, vol.57, pp.1-1810, 2009. ,
DOI : 10.3354/ame01317
Evidence for microbial attenuation of particle flux in the Amundsen Gulf and Beaufort Sea: elevated hydrolytic enzyme activity on sinking aggregates, Polar Biology, vol.7, issue.12, 2007. ,
DOI : 10.5194/bg-7-1007-2010
Estimating the growth rate of slowly-growing marine bacteria from RNA content, Appl. Environ . Microbiol, vol.59, pp.2594-2601, 1993. ,
Effects of suspended matter quality and virus abundance on microbial parameters: experimental evidence from a large European river, Aquatic Microbial Ecology, vol.57, pp.161-17310, 2009. ,
DOI : 10.3354/ame01341
Role of free-living and particle-attached bacteria in the recycling and export of organic material in the Hudson Bay system, Journal of Marine Systems, vol.88, issue.3, pp.434-445, 2011. ,
DOI : 10.1016/j.jmarsys.2010.12.003
Effects of future climate change on primary productivity and export fluxes in the Beaufort Sea, Journal of Geophysical Research, vol.32, issue.19, pp.10-1029, 2010. ,
DOI : 10.1007/978-3-642-18912-8_5
The fate of riverine nutrients on Arctic shelves, Biogeosciences Discussions, vol.9, issue.10, pp.13397-13437, 2012. ,
DOI : 10.5194/bgd-9-13397-2012
URL : https://hal.archives-ouvertes.fr/hal-01089953
A sediment and organic carbon budget for the Canadian Beaufort Shelf, Marine Geology, vol.144, issue.4, pp.255-27310, 1998. ,
DOI : 10.1016/S0025-3227(97)00106-0
Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected Contribution of Verrucomicrobia, PLoS ONE, vol.215, issue.4, p.35314, 2012. ,
DOI : 10.1371/journal.pone.0035314.s012
Tracing the transport of colored dissolved organic matter in water masses of the Southern Beaufort Sea: relationship with hydrographic characteristics, Biogeosciences, vol.95194, pp.925-94010, 2012. ,
Seasonal to hour variation scales in abundance and production of total and particle-attached bacteria in the open NW Mediterranean Sea (0???1000 m), Biogeosciences, vol.5, issue.6, pp.1573-158610, 1573. ,
DOI : 10.5194/bg-5-1573-2008
Bacterioplankton dynamics in northern San Francisco Bay: Role of particle association and seasonal freshwater flow, Limnology and Oceanography, vol.44, issue.2, pp.295-308, 1999. ,
DOI : 10.4319/lo.1999.44.2.0295
Linkage Between Bacterial Carbon Processing and the Structure of the Active Bacterial Community at a Coastal Site in the NW Mediterranean Sea, Microbial Ecology, vol.30, issue.3, pp.428-43510, 2010. ,
DOI : 10.1016/S0168-6496(00)00102-1
Evidence of heterotrophic prokaryotic activity limitation by nitrogen in the Western Arctic Ocean during summer, Polar Biology, vol.32, issue.19, pp.785-794, 2012. ,
DOI : 10.1029/2005GL024216
Carbon fluxes in the Canadian Arctic: patterns and drivers of bacterial abundance, production and respiration on the Beaufort Sea margin, Biogeosciences, vol.95194, pp.3679-369210, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01253997
The changing Arctic sea ice cover, Oceanography, pp.162-173, 2011. ,
Increasing River Discharge to the Arctic Ocean, Science, vol.298, issue.5601, pp.2171-2173, 2002. ,
DOI : 10.1126/science.1077445
URL : http://www.pik-potsdam.de/%7Estefan/Publications/Nature/peterson2002.pdf
Removing Noise From Pyrosequenced Amplicons, BMC Bioinformatics, vol.12, issue.1, pp.10-1186, 2011. ,
DOI : 10.1186/1471-2105-12-38
URL : http://doi.org/10.1186/1471-2105-12-38
High phylogenetic diversity in a marine-snow-associated bacterial assemblage, Aquatic Microbial Ecology, vol.14, pp.261-26910, 1998. ,
DOI : 10.3354/ame014261
Stability of bacterial and viral community compositions in Danish coastal waters as depicted by DNA fingerprinting techniques, Aquatic Microbial Ecology, vol.27, pp.219-23210, 2002. ,
DOI : 10.3354/ame027219
Intense photooxidative degradation of planktonic and bacterial lipids in sinking particles collected with sediment traps across the, Canadian Beaufort ShelfArctic Ocean) Biogeosciences, vol.95194, pp.4787-480210, 2012. ,
Dissolved organic matter composition and bioavailability reflect ecosystem productivity in the Western Arctic Ocean, Biogeosciences, vol.9, issue.12, pp.4993-500510, 2012. ,
DOI : 10.5194/bg-9-4993-2012
A simple, economical method for measuring bacterial protein synthesis rates in seawater using 3H- leucine, Mar. Microb. Food Webs, vol.6, pp.107-114, 1992. ,
Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution, Nature, vol.359, issue.6391, pp.139-142, 1992. ,
DOI : 10.1038/359139a0
Microbial diversity in the deep sea and the underexplored "rare biosphere", Proc. Natl. Acad. Sci. USA, pp.12115-12120, 2006. ,
DOI : 10.1093/bioinformatics/18.11.1546
Tag-Encoded FLX Amplicon Pyrosequencing for the Elucidation of Microbial and Functional Gene Diversity in Any Environment, Methods Mol. Biol, vol.733, pp.129-141, 2011. ,
DOI : 10.1007/978-1-61779-089-8_9
The effects of irradiance and nutrient supply on the productivity of Arctic waters: a perspective on climate change, Influence of Climate Change on the Changing Arctic and SubArctic Conditions, pp.73-93, 2009. ,
DOI : 10.1007/978-1-4020-9460-6_7
Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France), Aquatic Microbial Ecology, vol.28, pp.13-2410, 2002. ,
DOI : 10.3354/ame028013
Bacterial production and microbial food web structure in a large arctic river and the coastal Arctic Ocean, Journal of Marine Systems, vol.74, issue.3-4, pp.756-773, 2008. ,
DOI : 10.1016/j.jmarsys.2007.12.002
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy, Applied and Environmental Microbiology, vol.73, issue.16, pp.5261-52671000062, 1128. ,
DOI : 10.1128/AEM.00062-07
Footprints of climate change in the Arctic marine ecosystem, Global Change Biology, vol.114, issue.2, pp.1235-1249, 2011. ,
DOI : 10.1029/2008JC005000
A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters, The ISME Journal, vol.12, issue.10, pp.1883-1900 ,
DOI : 10.1073/pnas.1018221108
Optical variability of seawater in relation to particle concentration, composition, and size distribution in the nearshore marine environment at Imperial Beach, California, Journal of Geophysical Research, vol.43, issue.2, p.802710, 1029. ,
DOI : 10.5670/oceanog.2004.49