, Rods and cones in the mouse retina. I. Structural analysis using light and electron microscopy, The Journal of Comparative Neurology, vol.49, issue.2, pp.245-262, 1979.
DOI : 10.5962/bhl.title.7369
, Two cone types of rat retina detected by anti-visual pigment antibodies, Experimental Eye Research, vol.55, issue.1, pp.47-52, 1992.
DOI : 10.1016/0014-4835(92)90090-F
, Circadian profile and photic regulation of clock genes in the suprachiasmatic nucleus of a diurnal mammal arvicanthis ansorgei, Neuroscience, vol.116, issue.2, pp.583-591, 2003.
DOI : 10.1016/S0306-4522(02)00654-1
, The squirrel as a rodent model of the human visual system, Visual Neuroscience, vol.22, issue.05, pp.765-78, 2006.
DOI : 10.1016/0042-6989(79)90029-4
, Current practices in a captive breeding colony of 13-lined ground squirrels (Ictidomys tridecemlineatus) Lab Anim, pp.315-325, 2012.
, : A Novel Diurnal Rodent Model for the Study of Cone Pathophysiology, Investigative Opthalmology & Visual Science, vol.47, issue.7, pp.3109-3118, 2006.
DOI : 10.1167/iovs.05-1397
, Cone loss is delayed relative to rod loss during induced retinal degeneration in the diurnal cone-rich rodent Arvicanthis ansorgei, Neuroscience, vol.169, issue.4, pp.1815-1830, 2010.
DOI : 10.1016/j.neuroscience.2010.06.037
, Chromosomal diversity in the genus Arvicanthis (Rodentia, Muridae) from East Africa: a taxonomic and phylogenetic evaluation, Journal of Zoological Systematics and Evolutionary Research, vol.9, issue.3, pp.223-225, 2006.
DOI : 10.1080/03946975.1996.10539304
, Transcriptome analysis reveals rod/cone photoreceptor specific signatures across mammalian retinas, Human Molecular Genetics, vol.25, pp.4376-4388, 2016.
DOI : 10.1093/hmg/ddw268
, Mitochondrial and Nuclear Genes-Based Phylogeography of Arvicanthis niloticus (Murinae) and Sub-Saharan Open Habitats Pleistocene History, PLoS ONE, vol.15, issue.11, pp.77815-24223730, 2013.
DOI : 10.1371/journal.pone.0077815.s001
URL : https://hal.archives-ouvertes.fr/hal-01189776
, A Molecular Perspective on the Systematics and Evolution of the, ): Inferences from Complete Cytochrome b Gene Sequences
, Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes, BMC Genomics, vol.14, issue.1, pp.486-23865674, 2013.
DOI : 10.1016/j.devcel.2010.10.003
, Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, vol.30, issue.15, pp.2114-24695404, 2014.
DOI : 10.1093/bioinformatics/btu170
URL : https://academic.oup.com/bioinformatics/article-pdf/30/15/2114/17143152/btu170.pdf
, Full-length transcriptome assembly from RNA-Seq data without a reference genome, Nature Biotechnology, vol.30, issue.7, pp.644-652, 2011.
DOI : 10.1101/GR.229202. ARTICLE PUBLISHED ONLINE BEFORE MARCH 2002
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3571712
, RSEM, BMC Bioinformatics, vol.12, pp.323-21816040, 2011.
DOI : 10.1201/b16589-5
, BLAST+: architecture and applications, BMC Bioinformatics, vol.10, issue.1, p.421, 2009.
DOI : 10.1186/1471-2105-10-421
URL : http://doi.org/10.1186/1471-2105-10-421
, UniProt: a hub for protein information, Nucleic Acids Res, vol.43, pp.204-216, 2014.
, Accelerated Profile HMM Searches, PLoS Computational Biology, vol.21, issue.10, p.22039361, 2011.
DOI : 10.1371/journal.pcbi.1002195.g006
URL : http://doi.org/10.1371/journal.pcbi.1002195
, The Pfam protein families database: towards a more sustainable future, Nucleic Acids Research, vol.44, issue.D1, pp.279-285, 2015.
DOI : 10.1093/nar/gkv1344
URL : https://hal.archives-ouvertes.fr/hal-01294685
, SignalP 4.0: discriminating signal peptides from transmembrane regions, Nature Methods, vol.6, issue.10, pp.785-786, 2011.
DOI : 10.1016/0005-2795(75)90109-9
, Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen, Journal of Molecular Biology, vol.305, issue.3, pp.567-580, 2001.
DOI : 10.1006/jmbi.2000.4315
, RNAmmer: consistent and rapid annotation of ribosomal RNA genes, Nucleic Acids Research, vol.35, issue.9, pp.3100-3108, 2007.
DOI : 10.1093/nar/gkm160
, UniRef: comprehensive and non-redundant UniProt reference clusters, Bioinformatics, vol.23, issue.10, pp.1282-1288, 2007.
DOI : 10.1093/bioinformatics/btm098
URL : https://academic.oup.com/bioinformatics/article-pdf/23/10/1282/499932/btm098.pdf
, Gene ontology consortium: Going forward, Nucleic Acids Res, vol.43, pp.1049-1056, 2015.
, eggNOG v4.0: nested orthology inference across 3686 organisms, Nucleic Acids Research, vol.42, issue.D1, pp.231-239, 2014.
DOI : 10.1093/nar/gkt1253
, Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles, Proceedings of the National Academy of Sciences, vol.19, issue.18, pp.15545-50, 2005.
DOI : 10.1093/bioinformatics/btg363
, Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks, Genome Research, vol.13, issue.11, pp.2498-2504, 2013.
DOI : 10.1101/gr.1239303
, MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1797, 2004.
DOI : 10.1093/nar/gkh340
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC390337
, The Neighbor-joining Method: A New Method for Reconstructing Phylogenetic Trees', Mol Biol Evol, vol.4, pp.406-425, 1987.
, Prospects for inferring very large phylogenies by using the neighbor-joining method, Proceedings of the National Academy of Sciences, vol.95, issue.21, pp.11030-11035, 2004.
DOI : 10.1073/pnas.95.21.12390
, MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0, Molecular Biology and Evolution, vol.30, issue.12, pp.2725-2729, 2013.
DOI : 10.1093/molbev/mst197
URL : https://academic.oup.com/mbe/article-pdf/30/12/2725/19498310/mst197.pdf