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Mobility of Plasmids
C. Smillie
,
M. P. Garcillan-Barcia
,
M. V. Francia
,
Eduardo P.C. Rocha
,
F. de La Cruz
Article dans une revue
pasteur-01374958v1
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PanACoTA: a modular tool for massive microbial comparative genomics
Amandine Perrin
,
Eduardo P. C. Rocha
Article dans une revue
hal-03357352v1
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A Genomic Survey of Reb Homologs Suggests Widespread Occurrence of R-Bodies in Proteobacteria
Kasie Raymann
,
Louis-Marie Bobay
,
Thomas G. Doak
,
Michael Lynch
,
Simonetta Gribaldo
Article dans une revue
hal-01579027v1
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Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement
Rainer Borriss
,
Antoine Danchin
,
Colin R. Harwood
,
Claudine Médigue
,
Eduardo P. C. Rocha
,
et al.
Article dans une revue
cea-02291345v1
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Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages
Rubén Barcia-Cruz
,
David Goudenège
,
Jorge Moura de Sousa
,
Damien Piel
,
Martial Marbouty
,
et al.
Article dans une revue
hal-04413133v1
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Complete Nucleotide Sequence of Two Multidrug-Resistant IncR Plasmids from Klebsiella pneumoniae
Fabrice Compain
,
L. Frangeul
,
Laurence Drieux
,
Charlotte Verdet
,
Sylvain Brisse
,
et al.
Article dans une revue
pasteur-03252020v1
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TLR9 Activation Is Triggered by the Excess of Stimulatory versus Inhibitory Motifs Present in Trypanosomatidae DNA
Melissa Erin Khan
,
Chloé Borde
,
Eduardo P C Rocha
,
Véronique Mériaux
,
Vincent Maréchal
,
et al.
Article dans une revue
hal-01342968v1
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Pervasive domestication of defective prophages by bacteria
M. Bobay
,
M. Touchon
,
E. P. C. Rocha
Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (33), pp.12127 - 12132. ⟨10.1073/pnas.1405336111⟩
Article dans une revue
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Manipulating or Superseding Host Recombination Functions: A Dilemma That Shapes Phage Evolvability
Marie Bobay
,
Marie Touchon
,
Eduardo P. C. Rocha
Article dans une revue
pasteur-01374955v1
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IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella
Bertrand Néron
,
Eloi Littner
,
Matthieu Haudiquet
,
Amandine Perrin
,
Jean Cury
,
et al.
Article dans une revue
hal-03655020v1
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The Adaptation of Temperate Bacteriophages to Their Host Genomes
M. Bobay
,
E. P. C. Rocha
,
M. Touchon
Article dans une revue
pasteur-01374945v1
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Tools for massive bacterial comparative genomics : Development and Applications
Amandine Perrin
Thèse
tel-03789655v2
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The Impact of Selection, Gene Conversion, and Biased Sampling on the Assessment of Microbial Demography
Marguerite Lapierre
,
Camille Blin
,
Amaury Lambert
,
Guillaume Achaz
,
Eduardo P C Rocha
Article dans une revue
pasteur-01374966v1
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Testing for independence between evolutionary processes
Abdelkader Behdenna
,
Joël Pothier
,
Sophie S. Abby
,
Guillaume Achaz
,
Amaury Lambert
Article dans une revue
hal-01490961v1
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The evolution of protein secretion systems by co-option and tinkering of cellular machineries
Rémi Denise
,
Sophie S. Abby
,
Eduardo Rocha
Article dans une revue
pasteur-02626815v1
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Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites
Céline Loot
,
Gael A Millot
,
Egill Richard
,
Eloi Littner
,
Claire Vit
,
et al.
Article dans une revue
pasteur-04384854v1
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Cassette recombination dynamics within chromosomal integrons are regulated by toxin-antitoxin systems
Egill Richard
,
Baptiste Darracq
,
Eloi Littner
,
Claire Vit
,
Clémence Whiteway
,
et al.
Article dans une revue
hal-04397951v1
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Genetic drivers of chromosomal integron stability
Egill Richard
,
Baptiste Darracq
,
Eloi Littner
,
Claire Vit
,
Clémence Whiteway
,
et al.
2022
Pré-publication, Document de travail
pasteur-03824759v1
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Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency
Matthieu Haudiquet
,
Julie Le Bris
,
Amandine Nucci
,
Rémy A Bonnin
,
Pilar Domingo-Calap
,
et al.
Article dans une revue
hal-04492345v1
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Bacteria in Ostreococcus tauri cultures – friends, foes or hitchhikers?
Sophie S Abby
,
Marie Touchon
,
Aurelien de Jode
,
Nigel Grimsley
,
Gwenael Piganeau
Article dans une revue
hal-01321228v1
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Co-option de systèmes moléculaires complexes de la membrane bactérienne et archéenne
Rémi Denise
Thèse
tel-03349214v1
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PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome Graph
Guillaume Gautreau
,
Christophe Ambroise
,
Catherine Matias
,
Amandine Perrin
,
Rémi Planel
,
et al.
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Communication dans un congrès
hal-04355945v1
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Phage-host coevolution in natural populations
Damien Piel
,
Maxime Bruto
,
Yannick Labreuche
,
François Blanquart
,
David Goudenège
,
et al.
Article dans une revue
hal-03738913v1
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Belt and braces: two escape ways to maintain the cassette reservoir of large chromosomal integrons
Egill Richard
,
Baptiste Darracq
,
Eloi Littner
,
Gael Millot
,
Valentin Conte
,
et al.
2023
Pré-publication, Document de travail
pasteur-04305445v1
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Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility
Rémi Denise
,
Sophie S. Abby
,
Eduardo P. C. Rocha
Article dans une revue
pasteur-02263349v1
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The Search for Therapeutic Bacteriophages Uncovers One New Subfamily and Two New Genera of Pseudomonas-Infecting Myoviridae
Marine Henry
,
Louis-Marie Bobay
,
Anne Chevallereau
,
Emilie Saussereau
,
Pieter-Jan Ceyssens
,
et al.
Article dans une revue
hal-01233568v1
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Interoperable medical data: The missing link for understanding COVID-19
Denis C Bauer
,
Alejandro Metke-Jimenez
,
Sebastian Maurer-Stroh
,
Suma Tiruvayipati
,
Laurence Wilson
,
et al.
Article dans une revue
hal-03149610v1
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Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
Marie Touchon
,
Amandine Perrin
,
Jorge A Moura de Sousa
,
Belinda Vangchhia
,
Samantha Burn
,
et al.
Article dans une revue
pasteur-02866790v2
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Metabolic diversity of the emerging pathogenic lineages ofKlebsiella pneumoniae
Camille Blin
,
Virginie Passet
,
Marie Touchon
,
Eduardo P. C. Rocha
,
Sylvain Brisse
Article dans une revue
pasteur-04076001v1
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Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes
Charles Coluzzi
,
Martin Guillemet
,
Fanny Mazzamurro
,
Marie Touchon
,
Maxime Godfroid
,
et al.
Article dans une revue
hal-04281854v1
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